SPACI score report for 3lyt in ASTRAL 1.55:

WARNING! The SPACI score for this entry is not valid. This is not an X-ray structure, so the resolution and R-factor listed may be arbitrary and not valid.

PDB Entry: 3lyt
SPACI score: 0.39 (not valid)
AEROSPACI score: 0.39 (not valid)

Experiment type: -
Resolution: 1.9
R-factor: 0.203
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 3
PCK3 PROCHECK H-bonds: 3
WCK1 WHAT_CHECK Packing: -2.586
WCK2 WHAT_CHECK Ramachandran: -3.391
WCK3 WHAT_CHECK Chi angles: -3.118
WCK4 WHAT_CHECK Backbone: -3.801

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).